Doxygen Doxyfile Changes I Usually Do (To the Default Generated File)

RECURSIVE = YES
EXTRACT_ALL = YES
REFERENCES_RELATION    = YES
REFERENCED_BY_RELATION = YES

the following for browsing through sources:
SOURCE_BROWSER = YES
INLINE_SOURCES = YES
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES

for collaboration diagrams:
HAVE_DOT =YES